Request ID: examplehttp://mulan.dcode.org/


Dynamic visualization:

Transcription factor binding sites conserved across all the species:
submit Mulan alignment to multiTF

Pairwise dynamic plots:
  seq1_seq2    seq1_seq3    seq1_seq4    seq1_seq5    seq1_seq6    seq1_seq7    seq1_seq8  

Dot-plots:
  seq1_seq2    seq1_seq3    seq1_seq4    seq1_seq5    seq1_seq6    seq1_seq7    seq1_seq8  

Update annotation:
editanno1anno2anno3anno4anno5anno6anno7anno8
sequence titles

Results & output files:
Mulan alignment file with being the base sequence ::  
tba.maf (88.8 kb) :: final TBA multiple alignment file (blasz textual format)
Phylogenetic tree :: evolutionary relationship among the sequences
refine.fasta (115.7 kb) :: intermediate multiple alignment file (FASTA format)

  pairwise data   list of ECRs  blast-type alignment  blastz alignment 
seq1_seq2detect ECRsseq1_seq2.blastseq1_seq2.blastz
seq1_seq3detect ECRsseq1_seq3.blastseq1_seq3.blastz
seq1_seq4detect ECRsseq1_seq4.blastseq1_seq4.blastz
seq1_seq5detect ECRsseq1_seq5.blastseq1_seq5.blastz
seq1_seq6detect ECRsseq1_seq6.blastseq1_seq6.blastz
seq1_seq7detect ECRsseq1_seq7.blastseq1_seq7.blastz
seq1_seq8detect ECRsseq1_seq8.blastseq1_seq8.blastz

Input files:
 sequence  seq. masked  repeats  annotation 
1seq1.faseq1.txtseq1.repsanno1.txt
2seq2.faseq2.txtseq2.repsanno2.txt
3seq3.faseq3.txtseq3.repsanno3.txt
4seq4.faseq4.txtseq4.repsanno4.txt
5seq5.faseq5.txtseq5.repsanno5.txt
6seq6.faseq6.txtseq6.repsanno6.txt
7seq7.faseq7.txtseq7.repsanno7.txt
8seq8.faseq8.txtseq8.repsanno8.txt
Contact dcode@ncbi.nlm.nih.gov if you have any questions or suggestions